Resolved System package updates failing

[Timo002]

Hello,

My system package updates are failing. Following this thread (System Updates (Plesk for Linux only)) I updated the packages manually via ssh with `yum update`. I had 124 packages to update and in Plesk only remains after the manual update.

The manual update however tells me everything is up to date, Plesk tells me this package still needs to be updated.

sysstat 9.0.4-31.el6 (base)

Updating this package from Plesk fails and so every update fails.

Running

plesk sbin pum --check

shows this:

2019-03-11 22:48:51 INFO: pum is called with arguments: ['--check']
Loaded plugins: fastestmirror, presto, priorities, security
Error: check ['dependencies', 'duplicates', 'obsoletes']
at-3.1.10-49.el6.x86_64 is a duplicate with at-3.1.10-48.el6.x86_64
audit-2.4.5-3.el6.x86_64 has missing requires of audit-libs = ('0', '2.4.5', '3.el6')
audit-2.4.5-6.el6.x86_64 is a duplicate with audit-2.4.5-3.el6.x86_64
certmonger-0.77.5-4.el6.x86_64 is a duplicate with certmonger-0.77.5-2.el6.x86_64
cpio-2.10-13.el6.x86_64 is a duplicate with cpio-2.10-12.el6_5.x86_64
device-mapper-1.02.117-12.el6.x86_64 has missing requires of device-mapper-libs = ('0', '1.02.117', '12.el6')
device-mapper-1.02.117-12.el6_9.1.x86_64 is a duplicate with device-mapper-1.02.117-12.el6.x86_64
fcoe-utils-1.0.28-6.el6.x86_64 is a duplicate with fcoe-utils-1.0.28-5.el6.x86_64
gdb-7.2-92.el6.x86_64 is a duplicate with gdb-7.2-90.el6.x86_64
grep-2.20-6.el6.x86_64 is a duplicate with grep-2.20-5.el6_8.x86_64
1:grub-0.97-99.el6.x86_64 is a duplicate with 1:grub-0.97-94.el6_7.1.x86_64
gzip-1.3.12-24.el6.x86_64 is a duplicate with gzip-1.3.12-22.el6.x86_64
iputils-20071127-24.el6.x86_64 is a duplicate with iputils-20071127-21.el6.x86_64
iscsi-initiator-utils-6.2.0.873-26.el6.x86_64 is a duplicate with iscsi-initiator-utils-6.2.0.873-22.el6_8.x86_64
iscsi-initiator-utils-6.2.0.873-27.el6_9.x86_64 is a duplicate with iscsi-initiator-utils-6.2.0.873-26.el6.x86_64
krb5-workstation-1.10.3-57.el6.x86_64 has missing requires of krb5-libs = ('0', '1.10.3', '57.el6')
krb5-workstation-1.10.3-65.el6.x86_64 is a duplicate with krb5-workstation-1.10.3-57.el6.x86_64
lldpad-0.9.46-3.el6_5.x86_64 has missing requires of lldpad-libs(x86-64) = ('0', '0.9.46', '3.el6_5')
lldpad-0.9.46-10.el6_8.x86_64 is a duplicate with lldpad-0.9.46-3.el6_5.x86_64
lvm2-2.02.143-7.el6_8.1.x86_64 has missing requires of lvm2-libs = ('0', '2.02.143', '7.el6_8.1')
lvm2-2.02.143-12.el6.x86_64 is a duplicate with lvm2-2.02.143-7.el6_8.1.x86_64
lvm2-2.02.143-12.el6.x86_64 has missing requires of lvm2-libs = ('0', '2.02.143', '12.el6')
lvm2-2.02.143-12.el6_9.1.x86_64 is a duplicate with lvm2-2.02.143-12.el6.x86_64
man-1.6f-39.el6.x86_64 is a duplicate with man-1.6f-32.el6.x86_64
mdadm-3.3.4-8.el6.x86_64 is a duplicate with mdadm-3.3.4-1.el6_8.5.x86_64
psacct-6.3.2-70.el6.x86_64 is a duplicate with psacct-6.3.2-63.el6_3.3.x86_64
1:smartmontools-5.43-3.el6.x86_64 is a duplicate with 1:smartmontools-5.43-1.el6.x86_64
sysstat-9.0.4-33.el6.x86_64 is a duplicate with sysstat-9.0.4-31.el6.x86_64
sysstat-9.0.4-33el6_9.1.x86_64 is a duplicate with sysstat-9.0.4-33.el6.x86_64
util-linux-ng-2.17.2-12.24.el6_8.1.x86_64 has missing requires of libblkid = ('0', '2.17.2', '12.24.el6_8.1')
util-linux-ng-2.17.2-12.24.el6_8.1.x86_64 has missing requires of libuuid = ('0', '2.17.2', '12.24.el6_8.1')
util-linux-ng-2.17.2-12.24.el6_8.3.x86_64 is a duplicate with util-linux-ng-2.17.2-12.24.el6_8.1.x86_64
util-linux-ng-2.17.2-12.24.el6_8.3.x86_64 has missing requires of libblkid = ('0', '2.17.2', '12.24.el6_8.3')
util-linux-ng-2.17.2-12.24.el6_8.3.x86_64 has missing requires of libuuid = ('0', '2.17.2', '12.24.el6_8.3')
util-linux-ng-2.17.2-12.28.el6.x86_64 is a duplicate with util-linux-ng-2.17.2-12.24.el6_8.3.x86_64
util-linux-ng-2.17.2-12.28.el6.x86_64 has missing requires of libblkid = ('0', '2.17.2', '12.28.el6')
util-linux-ng-2.17.2-12.28.el6.x86_64 has missing requires of libuuid = ('0', '2.17.2', '12.28.el6')
util-linux-ng-2.17.2-12.28.el6_9.1.x86_64 is a duplicate with util-linux-ng-2.17.2-12.28.el6.x86_64
util-linux-ng-2.17.2-12.28.el6_9.1.x86_64 has missing requires of libblkid = ('0', '2.17.2', '12.28.el6_9.1')
util-linux-ng-2.17.2-12.28.el6_9.1.x86_64 has missing requires of libuuid = ('0', '2.17.2', '12.28.el6_9.1')
util-linux-ng-2.17.2-12.28.el6_9.2.x86_64 is a duplicate with util-linux-ng-2.17.2-12.28.el6_9.1.x86_64
wget-1.12-10.el6.x86_64 is a duplicate with wget-1.12-8.el6.x86_64
2019-03-11 22:48:56 ERROR: Exited with returncode 1.
exit status 1

The update command from Plesk outputs this:

• 2019-03-11 22:40:56 INFO: pum is called with arguments: ['--update', '--json', '--', 'sysstat']
• 2019-03-11 22:40:59 INFO: updating packages: sysstat
• 2019-03-11 22:41:00 ERROR: Test Transaction Errors: file /usr/bin/cifsiostat from install of sysstat-9.0.4-33.el6_9.1.x86_64 conflicts with file from package sysstat-9.0.4-33el6_9.1.x86_64
• file /usr/bin/iostat from install of sysstat-9.0.4-33.el6_9.1.x86_64 conflicts with file from package sysstat-9.0.4-33el6_9.1.x86_64
• file /usr/bin/mpstat from install of sysstat-9.0.4-33.el6_9.1.x86_64 conflicts with file from package sysstat-9.0.4-33el6_9.1.x86_64
• file /usr/bin/pidstat from install of sysstat-9.0.4-33.el6_9.1.x86_64 conflicts with file from package sysstat-9.0.4-33el6_9.1.x86_64
• file /usr/bin/sadf from install of sysstat-9.0.4-33.el6_9.1.x86_64 conflicts with file from package sysstat-9.0.4-33el6_9.1.x86_64
• file /usr/bin/sar from install of sysstat-9.0.4-33.el6_9.1.x86_64 conflicts with file from package sysstat-9.0.4-33el6_9.1.x86_64
• file /usr/lib64/sa/sadc from install of sysstat-9.0.4-33.el6_9.1.x86_64 conflicts with file from package sysstat-9.0.4-33el6_9.1.x86_64
• 2019-03-11 22:41:00 ERROR: Exited with returncode 1.

I have no idea how to fix this.

 

[IgorG]

Try to resolve the issue by removing duplicated packages using the package-cleanup utility:

# package-cleanup --cleandupes

 

[Timo002]

Try to resolve the issue by removing duplicated packages using the package-cleanup utility:

# package-cleanup --cleandupes

Works perfectly! Thanks, my packages are now automatically updating again!