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Resolved Update from 12.5 to 17.5 leaves very many "duplicate" packages

Bitpalast

Bitpalast

Plesk addicted!
Plesk Guru
After upgrading from 12.5.30 to 17.5 we are getting the same message on system updates tool page as described in Resolved - Warning on System Updates Page

"Warning: Information on some packages might not be actual: inconsistencies were detected in the system's package manager database. Please resolve this issue manually."

Checking for duplicate packages
# package-cleanup --dupes
shows that the 12.5.30 packages remained on the system:

Code: 
Loaded plugins: fastestmirror
wpb-designs-01-17.0.15-43677.16080214.noarch
wpb-designs-01-12.5.30-43664.16072209.noarch
psa-autoinstaller-3.17.24-centos7.15081214.x86_64
psa-autoinstaller-3.21.0-centos7.17031018.x86_64
psa-courier-authlib-0.66.2-centos7.15081914.x86_64
psa-courier-authlib-0.66.2-centos7.17031716.x86_64
psa-selinux-12.5.30-cos7.build1205170125.17.noarch
psa-selinux-17.5.3-cos7.build1705170314.17.noarch
psa-turba-4.2.18-cos7.build1705170314.17.noarch
psa-turba-4.2.7-cos7.build1205150819.14.noarch
plesk-skins-17.5.3-cos7.build1705170320.17.noarch
plesk-skins-12.5.30-centos7.1371.16082315.noarch
wpb-designs-07-12.5.30-43664.16072209.noarch
wpb-designs-07-17.0.15-43677.16080214.noarch
psa-phpmyadmin-4.6.6-cos7.build1705170314.17.noarch
psa-phpmyadmin-4.6.6-cos7.build1205170125.17.noarch
wpb-designs-04-12.5.30-43664.16072209.noarch
wpb-designs-04-17.0.15-43677.16080214.noarch
psa-courier-imap-4.16.1-centos7.17031414.x86_64
psa-courier-imap-4.16.1-centos7.15081914.x86_64
wpb-headers-12.1.0-43664.16072209.noarch
wpb-headers-17.0.15-43677.16080214.noarch
psa-imp-6.2.9-cos7.build1205150819.14.noarch
psa-imp-6.2.17-cos7.build1705170314.17.noarch
plesk-core-12.5.30-cos7.build1205150826.19.x86_64
plesk-core-17.5.3-cos7.build1705170317.16.x86_64
plesk-mail-pc-driver-17.5.3-cos7.build1705170317.16.x86_64
plesk-mail-pc-driver-12.5.30-cos7.build1205161215.16.x86_64
plesk-modsecurity-configurator-17.5.3-cos7.build1705170317.16.noarch
plesk-modsecurity-configurator-12.5.30-cos7.build1205150826.19.noarch
sw-collectd-5.5.0.1-centos7.17031414.x86_64
sw-collectd-4.9.1-15072015.x86_64
wpb-designs-09-12.5.30-43664.16072209.noarch
wpb-designs-09-17.0.15-43677.16080214.noarch
wpb-designs-20-12.5.30-43664.16072209.noarch
wpb-designs-20-17.0.15-43677.16080214.noarch
plesk-l10n-12.5.30-cos7.build1205161215.18.noarch
plesk-l10n-17.5.3-cos7.build1705170412.20.noarch
psa-spamassassin-12.5.30-cos7.build1205150826.19.x86_64
psa-spamassassin-17.5.3-cos7.build1705170317.16.x86_64
wpb-designs-03-12.5.30-43664.16072209.noarch
wpb-designs-03-17.0.15-43677.16080214.noarch
wpb-designs-00-17.0.15-43677.16080214.noarch
wpb-designs-00-12.5.30-43664.16072209.noarch
psa-mod_proxy-2.4.6-centos7.16021710.x86_64
psa-mod_proxy-2.4.6-centos7.17031417.x86_64
psa-zendframework-1.11.15-cos7.build1205150720.14.noarch
psa-zendframework-1.12.17-cos7.build1705170314.17.noarch
psa-vhost-17.5.3-cos7.build1705170314.17.noarch
psa-vhost-12.5.30-cos7.build1205150819.14.noarch
wpb-designs-05-17.0.15-43677.16080214.noarch
wpb-designs-05-12.5.30-43664.16072209.noarch
sw-engine-2.16.2-centos7.201510051437.x86_64
sw-engine-2.21.0-centos7.201702161518.x86_64
psa-passwd-5.0.2-cos7.build1205150819.14.noarch
psa-passwd-5.0.6-cos7.build1705170314.17.noarch
plesk-modsecurity-crs-12.5.28-centos7.15072015.x86_64
plesk-modsecurity-crs-17.5.3-centos7.17031417.x86_64
plesk-management-node-17.5.3-cos7.build1705170317.16.x86_64
plesk-management-node-12.5.30-cos7.build1205150826.19.x86_64
psa-health-monitor-17.5.3-cos7.build1705170314.17.noarch
psa-health-monitor-12.5.30-cos7.build1205150819.14.noarch
sw-librrd-1.6.0.1-centos7.17031414.x86_64
sw-librrd-1.4.2-15072015.x86_64
pp-sitebuilder-17.0.15-16072217.noarch
pp-sitebuilder-12.5.30-16072209.noarch
psa-mnemo-4.2.12-cos7.build1705170314.17.noarch
psa-mnemo-4.2.6-cos7.build1205150819.14.noarch
libaps-1.0.8-centos7.798670.15021818.x86_64
libaps-1.0.8-centos7.798670.16071418.x86_64
psa-libxml-proxy-2.7.8.1-centos7.17031417.x86_64
psa-libxml-proxy-2.7.8.1-centos7.15072015.x86_64
plesk-completion-12.5.30-cos7.build1205150826.19.noarch
plesk-completion-17.5.3-cos7.build1705170317.16.noarch
psa-phppgadmin-5.1-cos7.build1705170314.17.noarch
psa-phppgadmin-5.1-cos7.build1205150720.14.noarch
plesk-platform-runtime-1.0.1-centos7.892097.15021818.x86_64
plesk-platform-runtime-1.0.1-centos7.892097.16021112.x86_64
psa-locale-base-en-US-12.5.30-cos7.build1205160722.12.noarch
psa-locale-base-en-US-17.5.3-cos7.build1705170316.17.noarch
plesk-rdbmspp-2.0.1-centos7.735641.16021112.x86_64
plesk-rdbmspp-2.0.1-centos7.735641.15021818.x86_64
psa-mailman-configurator-12.5.30-cos7.build1205150826.19.x86_64
psa-mailman-configurator-17.5.3-cos7.build1705170317.16.x86_64
psa-12.5.30-cos7.build1205150826.19.x86_64
psa-17.5.3-cos7.build1705170317.16.x86_64
plesk-roundcube-1.2.1-cos7.build1205160809.16.noarch
plesk-roundcube-1.2.4-cos7.build1705170327.22.noarch
sw-cp-server-2.4.0-centos7.17022818.x86_64
sw-cp-server-2.2.1-centos7.16072715.x86_64
psa-mod_fcgid-2.3.9.5-centos7.17031522.x86_64
psa-mod_fcgid-2.3.9.1-centos7.15072015.x86_64
plesk-service-node-utilities-17.5.3-cos7.build1705170317.16.x86_64
plesk-service-node-utilities-12.5.30-cos7.build1205150826.19.x86_64
wpb-core-12.5.30-43664.16072209.noarch
wpb-core-17.0.15-43677.16080214.noarch
psa-php5-configurator-1.7.0-cos7.build1205150924.14.x86_64
psa-php5-configurator-1.7.0-cos7.build1705170314.17.x86_64
plesk-engine-17.5.3-cos7.build1705170317.16.x86_64
plesk-engine-12.5.30-cos7.build1205151005.15.x86_64
plesk-config-troubleshooter-12.5.30-cos7.build1205150826.19.x86_64
plesk-config-troubleshooter-17.5.3-cos7.build1705170317.16.x86_64
plesk-lmlib-0.1.1-centos7.623.15021818.x86_64
plesk-lmlib-0.2.3-centos7.825.16120615.x86_64
plesk-web-hosting-12.5.30-cos7.build1205150826.19.x86_64
plesk-web-hosting-17.5.3-cos7.build1705170317.16.x86_64
psa-proftpd-1.3.5b-cos7.build1205160427.18.x86_64
psa-proftpd-1.3.5d-cos7.build1705170314.14.x86_64
plesk-release-12.5.30-cos7.build1205150826.19.x86_64
plesk-release-17.5.3-cos7.build1705170317.16.x86_64
sw-rrdtool-1.6.0.1-centos7.17031414.x86_64
sw-rrdtool-1.4.2-15072015.x86_64
sw-libpoco-1.4.3p1.1-centos7.14101519.x86_64
sw-libpoco-1.4.3p1.1-centos7.16021112.x86_64
psa-phpfpm-configurator-1.0.0-cos7.build1705170314.17.x86_64
psa-phpfpm-configurator-1.0.0-cos7.build1205160218.11.x86_64
psa-pylibplesk-12.5.30-cos7.build1205150826.19.x86_64
psa-pylibplesk-17.5.3-cos7.build1705170317.16.x86_64
plesk-courier-imap-driver-17.5.3-cos7.build1705170317.16.x86_64
plesk-courier-imap-driver-12.5.30-cos7.build1205150826.19.x86_64
psa-libpam-plesk-17.5.3-cos7.build1705170317.16.x86_64
psa-libpam-plesk-12.5.30-cos7.build1205150826.19.x86_64
wpb-designs-12-12.5.30-43664.16072209.noarch
wpb-designs-12-17.0.15-43677.16080214.noarch
psa-horde-5.2.13-cos7.build1705170314.17.noarch
psa-horde-5.2.6-cos7.build1205150821.14.noarch
wpb-designs-14-17.0.15-43677.16080214.noarch
wpb-designs-14-12.5.30-43664.16072209.noarch
psa-ingo-3.2.13-cos7.build1705170314.17.noarch
psa-ingo-3.2.5-cos7.build1205150819.14.noarch
psa-courier-unicode-1.2-centos7.17031414.x86_64
psa-courier-unicode-1.2-centos7.15072015.x86_64
psa-kronolith-4.2.8-cos7.build1205150819.14.noarch
psa-kronolith-4.2.19-cos7.build1705170314.17.noarch
plesk-base-12.5.30-cos7.build1205150826.19.x86_64
plesk-base-17.5.3-cos7.build1705170317.16.x86_64
plesk-mysql-connector-odbc-5.2.7-centos7.17031417.x86_64
plesk-mysql-connector-odbc-5.2.7-centos7.15072015.x86_64
psa-updates-17.5.3-cos7.build1705170314.17.noarch
psa-updates-12.5.28-cos7.build1205150720.14.noarch
psa-mod_sysenv-0.2-centos7.15072015.x86_64
psa-mod_sysenv-0.2-centos7.17031417.x86_64
psa-firewall-12.5.30-cos7.build1205150826.19.x86_64
psa-firewall-17.5.3-cos7.build1705170317.16.x86_64
psa-mod_aclr2-14081815-centos7.17031414.9e86c2f.x86_64
psa-mod_aclr2-14081815-centos7.15072015.9e86c2f.x86_64
psa-mail-driver-common-12.5.30-cos7.build1205150826.19.x86_64
psa-mail-driver-common-17.5.3-cos7.build1705170317.16.x86_64
psa-pear-1.9.4-20131009.14070712.noarch
psa-pear-1.10.3.1-20170302.centos7.17031417.noarch
psa-drweb-configurator-12.5.30-cos7.build1205150826.19.x86_64
psa-drweb-configurator-17.5.3-cos7.build1705170317.16.x86_64

Should the 12.50.30 version not have been removed? Can they safely be removed manually? Will system updates from the GUI work despite the warning?
 
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