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Resolved mysql upgrade

What is the output of command:

# rpm -qa | grep -i mysql

on your server?
 
What about

# cat /etc/yum.repos.d/atomic.repo | grep -B1 enabled

?
 
As you can see Atomic repository is disabled (first "enabled = 0")
Change it to

enabled = 1

and run

# yum update mysql

again.
 
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