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httpdocs default files and directories - are they necessary?

Ewan

New Pleskian
Plesk12 on IIS8.5/Windows2012r2.

Migrating existing IIS websites into Plesk we are creating new clean websites and then copying the existing code across into the httpdocs directory.

Should we leave all the documents and file structures created by Plesk in place when we do this OR can we delete everything in the httpdocs directory and copy our own code into here?
 
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